Selected Publications

Diether M, Nikolaev Y, Allain Fh, Sauer U. Systematic Mapping of Protein-metabolite Interactions in Central Metabolism of Escherichia Coli.

Mol Syst Biol. 2019 Aug;15(8):e9008. doi: 10.15252/msb.20199008. PMID: 31464375; PMCID: PMC6706640.

Zampieri, M., Hörl, M., Hotz, F. Et Al. Regulatory Mechanisms Underlying Coordination of Amino Acid and Glucose Catabolism in Escherichia Coli.

Nat Commun 10, 3354 (2019).

Blasche S, Kim Y, Mars Rat, Machado D, Maansson M, Kafkia E, Milanese a, Zeller G, Teusink B, Nielsen J, Benes V, Neves R, Sauer U, Patil Kr. Metabolic Cooperation and Spatiotemporal Niche Partitioning in a Kefir Microbial Community.

Nat Microbiol. 2021 Feb;6(2):196-208. doi: 10.1038/s41564-020-00816-5. Epub 2021 Jan 4. PMID: 33398099; PMCID: PMC7610452.

Sergushichev, a., Et Al. Gam: a Web-service for Integrated Transcriptional and Metabolic Network Analysis.

Nucleic Acids Research 2016, 44(W1): W194-200.

Holbrook-smith, D. Et Al. High-throughput Metabolomics Predicts Drug–target Relationships for Eukaryotic Proteins.

Mol Systems Biology 2022, 18(2): e10767.

Jha, a., Et Al. Network Integration of Parallel Metabolic and Transcriptional Data Reveals Metabolic Modules That Regulate Macrophage Polarization.

Immunity 2015, 42(3): 419–430. doi: 10.1016/j.immuni.2015.02.005.

Williams EG, Pfister N, Roy S, Statzer C, Haverty J, Ingels J, Bohl C, Hasan M, Čuklina J, Bühlmann P, Zamboni N, Lu L, Ewald CY, Williams RW, Aebersold R. Multiomic profiling of the liver across diets and age in a diverse mouse population.

Cell Syst. 2022 Jan 19;13(1):43-57.e6.

Mitroulis, I. et al. Modulation of Myelopoiesis Progenitors Is an Integral Component of Trained Immunity.

Cell 2018, 172(1-2):147-161.

Presented Abstract, Rheos Medicines: Camacho D., et al. Transcriptional Subsetting of SLE Patient Cohorts Based on Metabolic Pathway Activity [abstract].

Arthritis Rheumatol. 2021, 73 (suppl 9).

Fuhrer, T., et al. High-Throughput, Accurate Mass Metabolome Profiling of Cellular Extracts by Flow Injection time-of-Flight Mass Spectrometry.

Analytical Chemistry 2011, 83(18):7074-80.